850309 reads, size:604340159 bytes, created 2015-01-07 20:50:37
Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences.
| Number | Percentage | |
| MAPQ >= 30 | 797672.0 | 93.8 |
| MAPQ < 30 | 2641.0 | 0.3 |
| MAPQ < 20 | 2786.0 | 0.3 |
| MAPQ < 10 | 2090.0 | 0.2 |
| MAPQ < 3 | 580.0 | 0.1 |
| Unmapped | 44540.0 | 5.2 |
| Total | 850309.0 | 100.0 |
Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences.
Distribution of read lengths separated by mapping quality thresholds.
Base quality distributions separated by mapping quality thresholds.
A HMM was trained on a subset of the sequences. Shown are log2 odds ratios comparing emission probabilities in match states to background nucleotide probabilities. Values above 0 indicate positional enrichment of a particular nucleotide. "L" indicates the emission probabilities for a state modelling residiues in the middle of the reads.
A HMM was trained on a subset of the sequences. Shown are log2 odds ratios comparing emission probabilities in match states to background nucleotide probabilities. Values above 0 indicate positional enrichment of a particular nucleotide. "L" indicates the emission probabilities for a state modelling residiues in the middle of the reads.
A HMM was trained on a subset of the sequences. Shown are log2 odds ratios comparing emission probabilities in match states to background nucleotide probabilities. Values above 0 indicate positional enrichment of a particular nucleotide. "L" indicates the emission probabilities for a state modelling residiues in the middle of the reads.
Distribution of Mismatches in MAPQ >= 30 reads.
Distribution of Mismatches in MAPQ < 30 reads.
Distribution of Mismatches in MAPQ < 20 reads.
Distribution of Mismatches in MAPQ < 10 reads.
Distribution of Mismatches in MAPQ < 3 reads.
Barplot shows the percentage of reads (y-axis) with 0, 1, 2 ... errors (x axis) for MAPQ >= 30 reads.
Barplot shows the percentage of reads (y-axis) with 0, 1, 2 ... errors (x axis) for MAPQ < 30 reads.
Barplot shows the percentage of reads (y-axis) with 0, 1, 2 ... errors (x axis) for MAPQ < 20 reads.
Barplot shows the percentage of reads (y-axis) with 0, 1, 2 ... errors (x axis) for MAPQ < 10 reads.
Barplot shows the percentage of reads (y-axis) with 0, 1, 2 ... errors (x axis) for MAPQ < 3 reads.